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SRX20608069: GSM7462036: 13812T; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 22.8M spots, 6.8G bases, 2.1Gb downloads

External Id: GSM7462036_r1
Submitted by: NIH
Study: Co-enrichment of cancer-associated bacterial taxa is correlated with immune cell infiltrates in esophageal tumor tissue
show Abstracthide Abstract
Rates of esophageal adenocarcinoma are rising globally, with risk factors including a range of genetic and environmental factors, including obesity, tobacco smoking, TP53 mutations, and Barrett's esophagus, a proinflammatory condition which often occurs prior to developing adenocarcinoma. Interestingly, these factors also modulate the gastrointestinal microbiome. To better understand the linkage between the microbiome, inflammation, and development of esophageal adenocarcinoma, we integrated 16S and RNA sequencing data. We found several microbial taxa enriched in tumor samples which were correlated with predicted immune cell infiltration from RNA-seq data, including a decrease in megakaryocyte-erythroid progenitor cells with a concomitant increase in platelets. These data suggest dysbiosis of the intratumoral microbiome promotes development and production of platelets, which reveal alterations in the immune microenvironment of esophageal adenocarcinoma and suggest novel therapeutic targets. Overall design: 49 esophageal normal and adenocarcinoma tissues
Sample: 13812T
SAMN35652614 • SRS17908001 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7462036
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from frozen lung tissues using TRIzol (Invitrogen) according to the manufacturer's protocol. Only RNA samples with RNA sufficient RNA were included for analysis. Libraries suitable for paired-ended sequencing were generated using Illumina's TruSeq Stranded Total RNA Library Prep Kit.
Runs: 1 run, 22.8M spots, 6.8G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR2484382422,764,4976.8G2.1Gb2024-02-07

ID:
28036778

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